mon, 21-dec-2015, 16:58

Introduction

While riding to work this morning I figured out a way to disentangle the effects of trail quality and physical conditioning (both of which improve over the season) from temperature, which also tends to increase throughout the season. As you recall in my previous post, I found that days into the season (winter day of year) and minimum temperature were both negatively related with fat bike energy consumption. But because those variables are also related to each other, we can’t make statements about them individually.

But what if we look at pairs of trips that are within two days of each other and look at the difference in temperature between those trips and the difference in energy consumption? We’ll only pair trips going the same direction (to or from work), and we’ll restrict the pairings to two days or less. That eliminates seasonality from the data because we’re always comparing two trips from the same few days.

Data

For this analysis, I’m using SQL to filter the data because I’m better at window functions and filtering in SQL than R. Here’s the code to grab the data from the database. (The CSV file and RMarkdown script is on my GitHub repo for this analysis). The trick here is to categorize trips as being to work (“north”) or from work (“south”) and then include this field in the partition statement of the window function so I’m only getting the next trip that matches direction.

library(dplyr)
library(ggplot2)
library(scales)

exercise_db <- src_postgres(host="example.com", dbname="exercise_data")

diffs <- tbl(exercise_db,
            build_sql(
   "WITH all_to_work AS (
      SELECT *,
            CASE WHEN extract(hour from start_time) < 11
                 THEN 'north' ELSE 'south' END AS direction
      FROM track_stats
      WHERE type = 'Fat Biking'
            AND miles between 4 and 4.3
   ), with_next AS (
      SELECT track_id, start_time, direction, kcal, miles, min_temp,
            lead(direction) OVER w AS next_direction,
            lead(start_time) OVER w AS next_start_time,
            lead(kcal) OVER w AS next_kcal,
            lead(miles) OVER w AS next_miles,
            lead(min_temp) OVER w AS next_min_temp
      FROM all_to_work
      WINDOW w AS (PARTITION BY direction ORDER BY start_time)
   )
   SELECT start_time, next_start_time, direction,
      min_temp, next_min_temp,
      kcal / miles AS kcal_per_mile,
      next_kcal / next_miles as next_kcal_per_mile,
      next_min_temp - min_temp AS temp_diff,
      (next_kcal / next_miles) - (kcal / miles) AS kcal_per_mile_diff
   FROM with_next
   WHERE next_start_time - start_time < '60 hours'
   ORDER BY start_time")) %>% collect()

write.csv(diffs, file="fat_biking_trip_diffs.csv", quote=TRUE,
         row.names=FALSE)
kable(head(diffs))
start time next start time temp diff kcal / mile diff
2013-12-03 06:21:49 2013-12-05 06:31:54 3.0 -13.843866
2013-12-03 15:41:48 2013-12-05 15:24:10 3.7 -8.823329
2013-12-05 06:31:54 2013-12-06 06:39:04 23.4 -22.510564
2013-12-05 15:24:10 2013-12-06 16:38:31 13.6 -5.505662
2013-12-09 06:41:07 2013-12-11 06:15:32 -27.7 -10.227048
2013-12-09 13:44:59 2013-12-11 16:00:11 -25.4 -1.034789

Out of a total of 123 trips, 70 took place within 2 days of each other. We still don’t have a measure of trail quality, so pairs where the trail is smooth and hard one day and covered with fresh snow the next won’t be particularly good data points.

Let’s look at a plot of the data.

s = ggplot(data=diffs,
         aes(x=temp_diff, y=kcal_per_mile_diff)) +
   geom_point() +
   geom_smooth(method="lm", se=FALSE) +
   scale_x_continuous(name="Temperature difference between paired trips (degrees F)",
                     breaks=pretty_breaks(n=10)) +
   scale_y_continuous(name="Energy consumption difference (kcal / mile)",
                     breaks=pretty_breaks(n=10)) +
   theme_bw() +
   ggtitle("Paired fat bike trips to and from work within 2 days of each other")

print(s)
//media.swingleydev.com/img/blog/2015/12/paired_trip_plot.svg

This shows that when the temperature difference between two paired trips is negative (the second trip is colder than the first), additional energy is required for the second (colder) trip. This matches the pattern we saw in my earlier post where minimum temperature and winter day of year were negatively associated with energy consumption. But because we’ve used differences to remove seasonal effects, we can actually determine how large of an effect temperature has.

There are quite a few outliers here. Those that are in the region with very little difference in temperature are likey due to snowfall changing the trail conditions from one trip to the next. I’m not sure why there is so much scatter among the points on the left side of the graph, but I don’t see any particular pattern among those points that might explain the higher than normal variation, and we don’t see the same variation in the points with a large positive difference in temperature, so I think this is just normal variation in the data not explained by temperature.

Results

Here’s the linear regression results for this data.

summary(lm(data=diffs, kcal_per_mile_diff ~ temp_diff))
##
## Call:
## lm(formula = kcal_per_mile_diff ~ temp_diff, data = diffs)
##
## Residuals:
##     Min      1Q  Median      3Q     Max
## -40.839  -4.584  -0.169   3.740  47.063
##
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)
## (Intercept)  -2.1696     1.5253  -1.422    0.159
## temp_diff    -0.7778     0.1434  -5.424 8.37e-07 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 12.76 on 68 degrees of freedom
## Multiple R-squared:  0.302,  Adjusted R-squared:  0.2917
## F-statistic: 29.42 on 1 and 68 DF,  p-value: 8.367e-07

The model and coefficient are both highly signficant, and as we might expect, the intercept in the model is not significantly different from zero (if there wasn’t a difference in temperature between two trips there shouldn’t be a difference in energy consumption either, on average). Temperature alone explains 30% of the variation in energy consumption, and the coefficient tells us the scale of the effect: each degree drop in temperature results in an increase in energy consumption of 0.78 kcalories per mile. So for a 4 mile commute like mine, the difference between a trip at 10°F vs −20°F is an additional 93 kilocalories (30 × 0.7778 × 4 = 93.34) on the colder trip. That might not sound like much in the context of the calories in food (93 kilocalories is about the energy in a large orange or a light beer), but my average energy consumption across all fat bike trips to and from work is 377 kilocalories so 93 represents a large portion of the total.

tags: R  temperature  exercise  fat bike 
sun, 20-dec-2015, 15:16

Introduction

I’ve had a fat bike since late November 2013, mostly using it to commute the 4.1 miles to and from work on the Goldstream Valley trail system. I used to classic ski exclusively, but that’s not particularly pleasant once the temperatures are below 0°F because I can’t keep my hands and feet warm enough, and the amount of glide you get on skis declines as the temperature goes down.

However, it’s also true that fat biking gets much harder the colder it gets. I think this is partly due to biking while wearing lots of extra layers, but also because of increased friction between the large tires and tubes in a fat bike. In this post I will look at how temperature and other variables affect the performance of a fat bike (and it’s rider).

The code and data for this post is available on GitHub.

Data

I log all my commutes (and other exercise) using the RunKeeper app, which uses the phone’s GPS to keep track of distance and speed, and connects to my heart rate monitor to track heart rate. I had been using a Polar HR chest strap, but after about a year it became flaky and I replaced it with a Scosche Rhythm+ arm band monitor. The data from RunKeeper is exported into GPX files, which I process and insert into a PostgreSQL database.

From the heart rate data, I estimate energy consumption (in kilocalories, or what appears on food labels as calories) using a formula from Keytel LR, et al. 2005, which I talk about in this blog post.

Let’s take a look at the data:

library(dplyr)
library(ggplot2)
library(scales)
library(lubridate)
library(munsell)

fat_bike <- read.csv("fat_bike.csv", stringsAsFactors=FALSE, header=TRUE) %>%
    tbl_df() %>%
    mutate(start_time=ymd_hms(start_time, tz="US/Alaska"))

kable(head(fat_bike))
start_time miles time hours mph hr kcal min_temp max_temp
2013-11-27 06:22:13 4.17 0:35:11 0.59 7.12 157.8 518.4 -1.1 1.0
2013-11-27 15:27:01 4.11 0:35:49 0.60 6.89 156.0 513.6 1.1 2.2
2013-12-01 12:29:27 4.79 0:55:08 0.92 5.21 172.6 951.5 -25.9 -23.9
2013-12-03 06:21:49 4.19 0:39:16 0.65 6.40 148.4 526.8 -4.6 -2.1
2013-12-03 15:41:48 4.22 0:30:56 0.52 8.19 154.6 434.5 6.0 7.9
2013-12-05 06:31:54 4.14 0:32:14 0.54 7.71 155.8 463.2 -1.6 2.9

There are a few things we need to do to the raw data before analyzing it. First, we want to restrict the data to just my commutes to and from work, and we want to categorize them as being one or the other. That way we can analyze trips to ABR and home separately, and we’ll reduce the variation within each analysis. If we were to analyze all fat biking trips together, we’d be lumping short and long trips, as well as those with a different proportion of hills or more challenging conditions. To get just trips to and from work, I’m restricting the distance to trips between 4.0 and 4.3 miles, and only those activities where there were two of them in a single day (to work and home from work). To categorize them into commutes to work and home, I filter based on the time of day.

I’m also calculating energy per mile, and adding a “winter day of year” variable (wdoy), which is a measure of how far into the winter season the trip took place. We can’t just use day of year because that starts over on January 1st, so we subtract the number of days between January and May from the date and get day of year from that. Finally, we split the data into trips to work and home.

I’m also excluding the really early season data from 2015 because the trail was in really poor condition.

fat_bike_commute <- fat_bike %>%
    filter(miles>4, miles<4.3) %>%
    mutate(direction=ifelse(hour(start_time)<10, 'north', 'south'),
           date=as.Date(start_time, tz='US/Alaska'),
           wdoy=yday(date-days(120)),
           kcal_per_mile=kcal/miles) %>%
    group_by(date) %>%
    mutate(n=n()) %>%
    ungroup() %>%
    filter(n>1)

to_abr <- fat_bike_commute %>% filter(direction=='north',
                                      wdoy>210)
to_home <- fat_bike_commute %>% filter(direction=='south',
                                       wdoy>210)
kable(head(to_home %>% select(-date, -kcal, -n)))
start_time miles time hours mph hr min_temp max_temp direction wdoy kcal_per_mile
2013-11-27 15:27:01 4.11 0:35:49 0.60 6.89 156.0 1.1 2.2 south 211 124.96350
2013-12-03 15:41:48 4.22 0:30:56 0.52 8.19 154.6 6.0 7.9 south 217 102.96209
2013-12-05 15:24:10 4.18 0:29:07 0.49 8.60 150.7 9.7 12.0 south 219 94.13876
2013-12-06 16:38:31 4.17 0:26:04 0.43 9.60 154.3 23.3 24.7 south 220 88.63309
2013-12-09 13:44:59 4.11 0:32:06 0.54 7.69 161.3 27.5 28.5 south 223 119.19708
2013-12-11 16:00:11 4.19 0:33:48 0.56 7.44 157.6 2.1 4.5 south 225 118.16229

Analysis

Here a plot of the data. We’re plotting all trips with winter day of year on the x-axis and energy per mile on the y-axis. The color of the points indicates the minimum temperature and the straight line shows the trend of the relationship.

s <- ggplot(data=fat_bike_commute %>% filter(wdoy>210), aes(x=wdoy, y=kcal_per_mile, colour=min_temp)) +
    geom_smooth(method="lm", se=FALSE, colour=mnsl("10B 7/10", fix=TRUE)) +
    geom_point(size=3) +
    scale_x_continuous(name=NULL,
                       breaks=c(215, 246, 277, 305, 336),
                       labels=c('1-Dec', '1-Jan', '1-Feb', '1-Mar', '1-Apr')) +
    scale_y_continuous(name="Energy (kcal)", breaks=pretty_breaks(n=10)) +
    scale_colour_continuous(low=mnsl("7.5B 5/12", fix=TRUE), high=mnsl("7.5R 5/12", fix=TRUE),
                            breaks=pretty_breaks(n=5),
                            guide=guide_colourbar(title="Min temp (°F)", reverse=FALSE, barheight=8)) +
    ggtitle("All fat bike trips") +
    theme_bw()
print(s)
//media.swingleydev.com/img/blog/2015/12/wdoy_plot.svg

Across all trips, we can see that as the winter progresses, I consume less energy per mile. This is hopefully because my physical condition improves the more I ride, and also because the trail conditions also improve as the snow pack develops and the trail gets harder with use. You can also see a pattern in the color of the dots, with the bluer (and colder) points near the top and the warmer temperature trips near the bottom.

Let’s look at the temperature relationship:

s <- ggplot(data=fat_bike_commute %>% filter(wdoy>210), aes(x=min_temp, y=kcal_per_mile, colour=wdoy)) +
    geom_smooth(method="lm", se=FALSE, colour=mnsl("10B 7/10", fix=TRUE)) +
    geom_point(size=3) +
    scale_x_continuous(name="Minimum temperature (degrees F)", breaks=pretty_breaks(n=10)) +
    scale_y_continuous(name="Energy (kcal)", breaks=pretty_breaks(n=10)) +
    scale_colour_continuous(low=mnsl("7.5PB 2/12", fix=TRUE), high=mnsl("7.5PB 8/12", fix=TRUE),
                            breaks=c(215, 246, 277, 305, 336),
                            labels=c('1-Dec', '1-Jan', '1-Feb', '1-Mar', '1-Apr'),
                            guide=guide_colourbar(title=NULL, reverse=TRUE, barheight=8)) +
    ggtitle("All fat bike trips") +
    theme_bw()
print(s)
//media.swingleydev.com/img/blog/2015/12/min_temp_plot.svg

A similar pattern. As the temperature drops, it takes more energy to go the same distance. And the color of the points also shows the relationship from the earlier plot where trips taken later in the season require less energy.

There is also be a correlation between winter day of year and temperature. Since the winter fat biking season essentially begins in December, it tends to warm up throughout.

Results

The relationship between winter day of year and temperature means that we’ve got multicollinearity in any model that includes both of them. This doesn’t mean we shouldn’t include them, nor that the significance or predictive power of the model is reduced. All it means is that we can’t use the individual regression coefficients to make predictions.

Here are the linear models for trips to work, and home:

to_abr_lm <- lm(data=to_abr, kcal_per_mile ~ min_temp + wdoy)
print(summary(to_abr_lm))
##
## Call:
## lm(formula = kcal_per_mile ~ min_temp + wdoy, data = to_abr)
##
## Residuals:
##     Min      1Q  Median      3Q     Max
## -27.845  -6.964  -3.186   3.609  53.697
##
## Coefficients:
##              Estimate Std. Error t value Pr(>|t|)
## (Intercept) 170.81359   15.54834  10.986 1.07e-14 ***
## min_temp     -0.45694    0.18368  -2.488   0.0164 *
## wdoy         -0.29974    0.05913  -5.069 6.36e-06 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 15.9 on 48 degrees of freedom
## Multiple R-squared:  0.4069, Adjusted R-squared:  0.3822
## F-statistic: 16.46 on 2 and 48 DF,  p-value: 3.595e-06
to_home_lm <- lm(data=to_home, kcal_per_mile ~ min_temp + wdoy)
print(summary(to_home_lm))
##
## Call:
## lm(formula = kcal_per_mile ~ min_temp + wdoy, data = to_home)
##
## Residuals:
##     Min      1Q  Median      3Q     Max
## -21.615 -10.200  -1.068   3.741  39.005
##
## Coefficients:
##              Estimate Std. Error t value Pr(>|t|)
## (Intercept) 144.16615   18.55826   7.768 4.94e-10 ***
## min_temp     -0.47659    0.16466  -2.894  0.00570 **
## wdoy         -0.20581    0.07502  -2.743  0.00852 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 13.49 on 48 degrees of freedom
## Multiple R-squared:  0.5637, Adjusted R-squared:  0.5455
## F-statistic: 31.01 on 2 and 48 DF,  p-value: 2.261e-09

The models confirm what we saw in the plots. Both regression coefficients are negative, which means that as the temperature rises (and as the winter goes on) I consume less energy per mile. The models themselves are significant as are the coefficients, although less so in the trips to work. The amount of variation in kcal/mile explained by minimum temperature and winter day of year is 41% for trips to work and 56% for trips home.

What accounts for the rest of the variation? My guess is that trail conditions are the missing factor here; specifically fresh snow, or a trail churned up by snowmachiners. I think that’s also why the results are better on trips home than to work. On days when we get snow overnight, I am almost certainly riding on an pristine snow-covered trail, but by the time I leave work, the trail will be smoother and harder due to all the traffic it’s seen over the course of the day.

Conclusions

We didn’t really find anything surprising here: it is significantly harder to ride a fat bike when it’s colder. Because of conditioning, improved trail conditions, as well as the tendency for warmer weather later in the season, it also gets easier to ride as the winter goes on.

tags: R  temperature  exercise  fat bike 
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